Neighbor list to be used with VerletListsCells container. More...

#include <VLCAllCellsNeighborList.h>

Inheritance diagram for autopas::VLCAllCellsNeighborList< Particle_T >:

Collaboration diagram for autopas::VLCAllCellsNeighborList< Particle_T >:

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Public Types
using	ListType = typename VerletListsCellsHelpers::AllCellsNeighborListsType< Particle_T >
	Type of the data structure used to save the neighbor lists.

using	SoAPairOfParticleAndList = std::pair< size_t, std::vector< size_t, autopas::AlignedAllocator< size_t > > >
	Helper type definition.

using	SoAListType = typename std::vector< std::vector< SoAPairOfParticleAndList > >
	Helper type definition.

Public Member Functions
ContainerOption	getContainerType () const override
	Returns the container type of this neighbor list and the container it belongs to.

void	buildAoSNeighborList (LinkedCells< Particle_T > &linkedCells, bool useNewton3, double cutoff, double skin, double interactionLength, const TraversalOption vlcTraversalOpt, typename VerletListsCellsHelpers::VLCBuildType buildType) override
	Builds AoS neighbor list from underlying linked cells object.

size_t	getNumberOfPartners (const Particle_T *particle) const override
	Gets the number of neighbors over all neighbor lists that belong to this particle.

VerletListsCellsHelpers::AllCellsNeighborListsType< Particle_T > &	getAoSNeighborList ()
	Returns the neighbor list in AoS layout.

auto &	getSoANeighborList ()
	Returns the neighbor list in SoA layout.

void	generateSoAFromAoS (LinkedCells< Particle_T > &linkedCells) override
	Generates neighbor list in SoA layout from available neighbor list in AoS layout.

void	setUpTraversal (TraversalInterface *traversal) override
	Assigns the current traversal to the correct traversal interface.

Public Member Functions inherited from autopas::VLCNeighborListInterface< Particle_T >
virtual	~VLCNeighborListInterface ()=default
	Virtual default destructor.

virtual void	buildAoSNeighborList (LinkedCells< Particle_T > &linkedCells, bool useNewton3, double cutoff, double skin, double interactionLength, const TraversalOption vlcTraversalOpt, typename VerletListsCellsHelpers::VLCBuildType buildType)=0
	Builds AoS neighbor list from underlying linked cells object.

virtual size_t	getNumberOfPartners (const Particle_T *particle) const =0
	Gets the number of neighbors over all neighbor lists that belong to this particle.

virtual ContainerOption	getContainerType () const =0
	Returns the container type of this neighbor list and the container it belongs to.

virtual void	generateSoAFromAoS (LinkedCells< Particle_T > &linkedCells)=0
	Generates neighbor list in SoA layout from available neighbor list in AoS layout.

template<class TFunctor >
auto *	loadSoA (TFunctor *f)
	Loads cells into structure of arrays.

template<class TFunctor >
void	extractSoA (TFunctor *f)
	Extracts cells from structure of arrays.

virtual void	setUpTraversal (TraversalInterface *traversal)=0
	Assigns the current traversal to the correct traversal interface.

void	setLinkedCellsPointer (LinkedCells< Particle_T > *linkedCells)
	Set the Linked Cells Pointer for this List.

Additional Inherited Members
virtual void	applyBuildFunctor (LinkedCells< Particle_T > &linkedCells, bool useNewton3, double cutoff, double skin, double interactionLength, const TraversalOption &vlcTraversalOpt, typename VerletListsCellsHelpers::VLCBuildType buildType)=0
	Creates and applies a generator functor for the building of the neighbor list.

Protected Attributes inherited from autopas::VLCNeighborListInterface< Particle_T >
LinkedCells< Particle_T > *	_internalLinkedCells
	Internal linked cells structure.

SoA< typename Particle_T::SoAArraysType >	_soa
	Structure of arrays necessary for SoA data layout.

Detailed Description

template<class Particle_T>
class autopas::VLCAllCellsNeighborList< Particle_T >

Neighbor list to be used with VerletListsCells container.

Classic implementation of verlet lists based on linked cells.

Template Parameters

Particle_T Type of particle to be used for this neighbor list.

Member Typedef Documentation

◆ SoAListType

template<class Particle_T >

using autopas::VLCAllCellsNeighborList< Particle_T >::SoAListType = typename std::vector<std::vector<SoAPairOfParticleAndList> >

Helper type definition.

Vector of cells, for each cell a vector of neighbors. For each pair of cells, a vector of mappings from particle to its neighbor list.

◆ SoAPairOfParticleAndList

template<class Particle_T >

using autopas::VLCAllCellsNeighborList< Particle_T >::SoAPairOfParticleAndList = std::pair<size_t, std::vector<size_t, autopas::AlignedAllocator<size_t> >>

Helper type definition.

Pair of particle and neighbor list for SoA layout.

Member Function Documentation

◆ buildAoSNeighborList()

template<class Particle_T >

void autopas::VLCAllCellsNeighborList< Particle_T >::buildAoSNeighborList	(	LinkedCells< Particle_T > &	linkedCells,
		bool	useNewton3,
		double	cutoff,
		double	skin,
		double	interactionLength,
		const TraversalOption	vlcTraversalOpt,
		typename VerletListsCellsHelpers::VLCBuildType	buildType
	)

inlineoverridevirtual

Builds AoS neighbor list from underlying linked cells object.

Parameters

linkedCells	Linked Cells object used to build the neighbor list.
useNewton3	Whether Newton 3 should be used for the neighbor list.
cutoff	Cutoff radius.
skin	Skin of the verlet list.
interactionLength	Interaction length of the underlying linked cells object.
vlcTraversalOpt	Traversal for which this neighbor list is built.
buildType	Type of build functor to be used for the generation of the neighbor list.

Implements autopas::VLCNeighborListInterface< Particle_T >.

◆ generateSoAFromAoS()

template<class Particle_T >

void autopas::VLCAllCellsNeighborList< Particle_T >::generateSoAFromAoS ( LinkedCells< Particle_T > & linkedCells )

inlineoverridevirtual

Generates neighbor list in SoA layout from available neighbor list in AoS layout.

Copies the structure of the AoS neighbor list and replaces the particle pointers with the global indices of the particles.

Parameters

linkedCells Underlying linked cells structure.

Implements autopas::VLCNeighborListInterface< Particle_T >.

◆ getAoSNeighborList()

template<class Particle_T >

VerletListsCellsHelpers::AllCellsNeighborListsType< Particle_T > & autopas::VLCAllCellsNeighborList< Particle_T >::getAoSNeighborList ( )

inline

Returns the neighbor list in AoS layout.

Returns: Neighbor list in AoS layout.

◆ getContainerType()

template<class Particle_T >

ContainerOption autopas::VLCAllCellsNeighborList< Particle_T >::getContainerType ( ) const

inlineoverridevirtual

Returns the container type of this neighbor list and the container it belongs to.

Returns: ContainerOption for this neighbor list and the container it belongs to.

Implements autopas::VLCNeighborListInterface< Particle_T >.

◆ getNumberOfPartners()

template<class Particle_T >

size_t autopas::VLCAllCellsNeighborList< Particle_T >::getNumberOfPartners ( const Particle_T * particle ) const

inlineoverridevirtual

Gets the number of neighbors over all neighbor lists that belong to this particle.

Parameters

particle

Returns: the size of the neighbor list(s) of this particle

Implements autopas::VLCNeighborListInterface< Particle_T >.

◆ getSoANeighborList()

template<class Particle_T >

auto & autopas::VLCAllCellsNeighborList< Particle_T >::getSoANeighborList ( )

inline

Returns the neighbor list in SoA layout.

Returns: Neighbor list in SoA layout.

◆ setUpTraversal()

template<class Particle_T >

void autopas::VLCAllCellsNeighborList< Particle_T >::setUpTraversal ( TraversalInterface * traversal )

inlineoverridevirtual

Assigns the current traversal to the correct traversal interface.

The choice of traversal interface depends on the type(s) of neighbor list allowed to use the current traversal. Currently VLCCellPairTraversalInterface handles the traversals allowed solely for VLCCellPairNeighborList, while VLCTraversalInterface handles the traversals allowed for both VLCCellPairNeighborList and VLCAllCellsNeighborList.

Parameters

traversal the current traversal

Implements autopas::VLCNeighborListInterface< Particle_T >.

The documentation for this class was generated from the following file:

autopas/containers/verletListsCellBased/verletListsCells/neighborLists/VLCAllCellsNeighborList.h

Public Types

Public Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ SoAListType

◆ SoAPairOfParticleAndList

Member Function Documentation

◆ buildAoSNeighborList()

◆ generateSoAFromAoS()

◆ getAoSNeighborList()

◆ getContainerType()

◆ getNumberOfPartners()

◆ getSoANeighborList()

◆ setUpTraversal()