9#pragma message "Requested to compile LJFunctorAVX but AVX is not available!"
45template <
class Particle_T,
bool applyShift =
false,
bool useMixing =
false,
47 bool countFLOPs =
false,
bool relevantForTuning =
true>
50 calculateGlobals, countFLOPs, relevantForTuning>> {
51 using SoAArraysType =
typename Particle_T::SoAArraysType;
68 calculateGlobals, countFLOPs, relevantForTuning>>(cutoff),
69 _cutoffSquared{_mm256_set1_pd(cutoff * cutoff)},
70 _cutoffSquaredAoS(cutoff * cutoff),
71 _potentialEnergySum{0.},
72 _virialSum{0., 0., 0.},
74 _postProcessed{
false} {
75 if (calculateGlobals) {
78 if constexpr (countFLOPs) {
79 AutoPasLog(DEBUG,
"Using LJFunctorAVX with countFLOPs but FLOP counting is not implemented.");
84 relevantForTuning>>(cutoff) {
98 static_assert(not useMixing,
99 "Mixing without a ParticlePropertiesLibrary is not possible! Use a different constructor or set "
111 static_assert(useMixing,
112 "Not using Mixing but using a ParticlePropertiesLibrary is not allowed! Use a different constructor "
113 "or set mixing to true.");
114 _PPLibrary = &particlePropertiesLibrary;
117 std::string
getName() final {
return "LJFunctorAVX"; }
122 return useNewton3 == autopas::FunctorN3Modes::Newton3Only or useNewton3 == autopas::FunctorN3Modes::Both;
126 return useNewton3 == autopas::FunctorN3Modes::Newton3Off or useNewton3 == autopas::FunctorN3Modes::Both;
129 inline void AoSFunctor(Particle_T &i, Particle_T &j,
bool newton3)
final {
130 using namespace autopas::utils::ArrayMath::literals;
131 if (i.isDummy() or j.isDummy()) {
134 auto sigmaSquared = _sigmaSquaredAoS;
135 auto epsilon24 = _epsilon24AoS;
136 auto shift6 = _shift6AoS;
137 if constexpr (useMixing) {
140 if constexpr (applyShift) {
144 auto dr = i.getR() - j.getR();
147 if (dr2 > _cutoffSquaredAoS) {
151 double invdr2 = 1. / dr2;
152 double lj6 = sigmaSquared * invdr2;
153 lj6 = lj6 * lj6 * lj6;
154 double lj12 = lj6 * lj6;
155 double lj12m6 = lj12 - lj6;
156 double fac = epsilon24 * (lj12 + lj12m6) * invdr2;
163 if (calculateGlobals) {
167 auto virial = dr * f;
168 double potentialEnergy6 = epsilon24 * lj12m6 + shift6;
172 _aosThreadData[threadnum].potentialEnergySum += potentialEnergy6;
173 _aosThreadData[threadnum].virialSum += virial;
176 if (newton3 and j.isOwned()) {
177 _aosThreadData[threadnum].potentialEnergySum += potentialEnergy6;
178 _aosThreadData[threadnum].virialSum += virial;
195 const bool newton3)
final {
197 SoAFunctorPairImpl<true>(soa1, soa2);
199 SoAFunctorPairImpl<false>(soa1, soa2);
210 if (soa.
size() == 0)
return;
212 const auto *
const __restrict xptr = soa.template begin<Particle_T::AttributeNames::posX>();
213 const auto *
const __restrict yptr = soa.template begin<Particle_T::AttributeNames::posY>();
214 const auto *
const __restrict zptr = soa.template begin<Particle_T::AttributeNames::posZ>();
216 const auto *
const __restrict ownedStatePtr = soa.template begin<Particle_T::AttributeNames::ownershipState>();
218 auto *
const __restrict fxptr = soa.template begin<Particle_T::AttributeNames::forceX>();
219 auto *
const __restrict fyptr = soa.template begin<Particle_T::AttributeNames::forceY>();
220 auto *
const __restrict fzptr = soa.template begin<Particle_T::AttributeNames::forceZ>();
222 const auto *
const __restrict typeIDptr = soa.template begin<Particle_T::AttributeNames::typeId>();
224 __m256d virialSumX = _mm256_setzero_pd();
225 __m256d virialSumY = _mm256_setzero_pd();
226 __m256d virialSumZ = _mm256_setzero_pd();
227 __m256d potentialEnergySum = _mm256_setzero_pd();
231 for (
size_t i = soa.
size() - 1; (long)i >= 0; --i) {
237 static_assert(std::is_same_v<std::underlying_type_t<autopas::OwnershipState>, int64_t>,
238 "OwnershipStates underlying type should be int64_t!");
241 __m256i ownedStateI = _mm256_set1_epi64x(
static_cast<int64_t
>(ownedStatePtr[i]));
243 __m256d fxacc = _mm256_setzero_pd();
244 __m256d fyacc = _mm256_setzero_pd();
245 __m256d fzacc = _mm256_setzero_pd();
247 const __m256d x1 = _mm256_broadcast_sd(&xptr[i]);
248 const __m256d y1 = _mm256_broadcast_sd(&yptr[i]);
249 const __m256d z1 = _mm256_broadcast_sd(&zptr[i]);
255 for (; j < (i & ~(vecLength - 1)); j += 4) {
256 SoAKernel<true, false>(j, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStatePtr), x1, y1, z1, xptr, yptr,
257 zptr, fxptr, fyptr, fzptr, &typeIDptr[i], &typeIDptr[j], fxacc, fyacc, fzacc,
258 &virialSumX, &virialSumY, &virialSumZ, &potentialEnergySum, 0);
262 const int rest = (int)(i & (vecLength - 1));
264 SoAKernel<true, true>(j, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStatePtr), x1, y1, z1, xptr, yptr,
265 zptr, fxptr, fyptr, fzptr, &typeIDptr[i], &typeIDptr[j], fxacc, fyacc, fzacc, &virialSumX,
266 &virialSumY, &virialSumZ, &potentialEnergySum, rest);
270 const __m256d hSumfxfy = _mm256_hadd_pd(fxacc, fyacc);
271 const __m256d hSumfz = _mm256_hadd_pd(fzacc, fzacc);
273 const __m128d hSumfxfyLow = _mm256_extractf128_pd(hSumfxfy, 0);
274 const __m128d hSumfzLow = _mm256_extractf128_pd(hSumfz, 0);
276 const __m128d hSumfxfyHigh = _mm256_extractf128_pd(hSumfxfy, 1);
277 const __m128d hSumfzHigh = _mm256_extractf128_pd(hSumfz, 1);
279 const __m128d sumfxfyVEC = _mm_add_pd(hSumfxfyLow, hSumfxfyHigh);
280 const __m128d sumfzVEC = _mm_add_pd(hSumfzLow, hSumfzHigh);
282 const double sumfx = sumfxfyVEC[0];
283 const double sumfy = sumfxfyVEC[1];
284 const double sumfz = _mm_cvtsd_f64(sumfzVEC);
291 if constexpr (calculateGlobals) {
295 const __m256d hSumVirialxy = _mm256_hadd_pd(virialSumX, virialSumY);
296 const __m128d hSumVirialxyLow = _mm256_extractf128_pd(hSumVirialxy, 0);
297 const __m128d hSumVirialxyHigh = _mm256_extractf128_pd(hSumVirialxy, 1);
298 const __m128d hSumVirialxyVec = _mm_add_pd(hSumVirialxyHigh, hSumVirialxyLow);
301 const __m256d hSumVirialzPotentialEnergy = _mm256_hadd_pd(virialSumZ, potentialEnergySum);
302 const __m128d hSumVirialzPotentialEnergyLow = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 0);
303 const __m128d hSumVirialzPotentialEnergyHigh = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 1);
304 const __m128d hSumVirialzPotentialEnergyVec =
305 _mm_add_pd(hSumVirialzPotentialEnergyHigh, hSumVirialzPotentialEnergyLow);
309 _mm_store_pd(&globals[0], hSumVirialxyVec);
310 _mm_store_pd(&globals[2], hSumVirialzPotentialEnergyVec);
312 _aosThreadData[threadnum].virialSum[0] += globals[0];
313 _aosThreadData[threadnum].virialSum[1] += globals[1];
314 _aosThreadData[threadnum].virialSum[2] += globals[2];
315 _aosThreadData[threadnum].potentialEnergySum += globals[3];
320 template <
bool newton3>
323 if (soa1.
size() == 0 || soa2.
size() == 0)
return;
325 const auto *
const __restrict x1ptr = soa1.template begin<Particle_T::AttributeNames::posX>();
326 const auto *
const __restrict y1ptr = soa1.template begin<Particle_T::AttributeNames::posY>();
327 const auto *
const __restrict z1ptr = soa1.template begin<Particle_T::AttributeNames::posZ>();
328 const auto *
const __restrict x2ptr = soa2.template begin<Particle_T::AttributeNames::posX>();
329 const auto *
const __restrict y2ptr = soa2.template begin<Particle_T::AttributeNames::posY>();
330 const auto *
const __restrict z2ptr = soa2.template begin<Particle_T::AttributeNames::posZ>();
332 const auto *
const __restrict ownedStatePtr1 = soa1.template begin<Particle_T::AttributeNames::ownershipState>();
333 const auto *
const __restrict ownedStatePtr2 = soa2.template begin<Particle_T::AttributeNames::ownershipState>();
335 auto *
const __restrict fx1ptr = soa1.template begin<Particle_T::AttributeNames::forceX>();
336 auto *
const __restrict fy1ptr = soa1.template begin<Particle_T::AttributeNames::forceY>();
337 auto *
const __restrict fz1ptr = soa1.template begin<Particle_T::AttributeNames::forceZ>();
338 auto *
const __restrict fx2ptr = soa2.template begin<Particle_T::AttributeNames::forceX>();
339 auto *
const __restrict fy2ptr = soa2.template begin<Particle_T::AttributeNames::forceY>();
340 auto *
const __restrict fz2ptr = soa2.template begin<Particle_T::AttributeNames::forceZ>();
342 const auto *
const __restrict typeID1ptr = soa1.template begin<Particle_T::AttributeNames::typeId>();
343 const auto *
const __restrict typeID2ptr = soa2.template begin<Particle_T::AttributeNames::typeId>();
345 __m256d virialSumX = _mm256_setzero_pd();
346 __m256d virialSumY = _mm256_setzero_pd();
347 __m256d virialSumZ = _mm256_setzero_pd();
348 __m256d potentialEnergySum = _mm256_setzero_pd();
350 for (
unsigned int i = 0; i < soa1.
size(); ++i) {
356 __m256d fxacc = _mm256_setzero_pd();
357 __m256d fyacc = _mm256_setzero_pd();
358 __m256d fzacc = _mm256_setzero_pd();
360 static_assert(std::is_same_v<std::underlying_type_t<autopas::OwnershipState>, int64_t>,
361 "OwnershipStates underlying type should be int64_t!");
364 __m256i ownedStateI = _mm256_set1_epi64x(
static_cast<int64_t
>(ownedStatePtr1[i]));
366 const __m256d x1 = _mm256_broadcast_sd(&x1ptr[i]);
367 const __m256d y1 = _mm256_broadcast_sd(&y1ptr[i]);
368 const __m256d z1 = _mm256_broadcast_sd(&z1ptr[i]);
372 for (; j < (soa2.
size() & ~(vecLength - 1)); j += 4) {
373 SoAKernel<newton3, false>(j, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStatePtr2), x1, y1, z1, x2ptr,
374 y2ptr, z2ptr, fx2ptr, fy2ptr, fz2ptr, &typeID1ptr[i], &typeID2ptr[j], fxacc, fyacc,
375 fzacc, &virialSumX, &virialSumY, &virialSumZ, &potentialEnergySum, 0);
377 const int rest = (int)(soa2.
size() & (vecLength - 1));
379 SoAKernel<newton3, true>(j, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStatePtr2), x1, y1, z1, x2ptr,
380 y2ptr, z2ptr, fx2ptr, fy2ptr, fz2ptr, &typeID1ptr[i], &typeID2ptr[j], fxacc, fyacc,
381 fzacc, &virialSumX, &virialSumY, &virialSumZ, &potentialEnergySum, rest);
384 const __m256d hSumfxfy = _mm256_hadd_pd(fxacc, fyacc);
385 const __m256d hSumfz = _mm256_hadd_pd(fzacc, fzacc);
387 const __m128d hSumfxfyLow = _mm256_extractf128_pd(hSumfxfy, 0);
388 const __m128d hSumfzLow = _mm256_extractf128_pd(hSumfz, 0);
390 const __m128d hSumfxfyHigh = _mm256_extractf128_pd(hSumfxfy, 1);
391 const __m128d hSumfzHigh = _mm256_extractf128_pd(hSumfz, 1);
393 const __m128d sumfxfyVEC = _mm_add_pd(hSumfxfyLow, hSumfxfyHigh);
394 const __m128d sumfzVEC = _mm_add_pd(hSumfzLow, hSumfzHigh);
396 const double sumfx = sumfxfyVEC[0];
397 const double sumfy = sumfxfyVEC[1];
398 const double sumfz = _mm_cvtsd_f64(sumfzVEC);
405 if constexpr (calculateGlobals) {
409 const __m256d hSumVirialxy = _mm256_hadd_pd(virialSumX, virialSumY);
410 const __m128d hSumVirialxyLow = _mm256_extractf128_pd(hSumVirialxy, 0);
411 const __m128d hSumVirialxyHigh = _mm256_extractf128_pd(hSumVirialxy, 1);
412 const __m128d hSumVirialxyVec = _mm_add_pd(hSumVirialxyHigh, hSumVirialxyLow);
415 const __m256d hSumVirialzPotentialEnergy = _mm256_hadd_pd(virialSumZ, potentialEnergySum);
416 const __m128d hSumVirialzPotentialEnergyLow = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 0);
417 const __m128d hSumVirialzPotentialEnergyHigh = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 1);
418 const __m128d hSumVirialzPotentialEnergyVec =
419 _mm_add_pd(hSumVirialzPotentialEnergyHigh, hSumVirialzPotentialEnergyLow);
423 _mm_store_pd(&globals[0], hSumVirialxyVec);
424 _mm_store_pd(&globals[2], hSumVirialzPotentialEnergyVec);
426 _aosThreadData[threadnum].virialSum[0] += globals[0];
427 _aosThreadData[threadnum].virialSum[1] += globals[1];
428 _aosThreadData[threadnum].virialSum[2] += globals[2];
429 _aosThreadData[threadnum].potentialEnergySum += globals[3];
464 template <
bool newton3,
bool remainderIsMasked>
465 inline void SoAKernel(
const size_t j,
const __m256i ownedStateI,
const int64_t *
const __restrict ownedStatePtr2,
466 const __m256d &x1,
const __m256d &y1,
const __m256d &z1,
const double *
const __restrict x2ptr,
467 const double *
const __restrict y2ptr,
const double *
const __restrict z2ptr,
468 double *
const __restrict fx2ptr,
double *
const __restrict fy2ptr,
469 double *
const __restrict fz2ptr,
const size_t *
const typeID1ptr,
const size_t *
const typeID2ptr,
470 __m256d &fxacc, __m256d &fyacc, __m256d &fzacc, __m256d *virialSumX, __m256d *virialSumY,
471 __m256d *virialSumZ, __m256d *potentialEnergySum,
const unsigned int rest = 0) {
472 __m256d epsilon24s = _epsilon24;
473 __m256d sigmaSquareds = _sigmaSquared;
474 __m256d shift6s = _shift6;
477 epsilon24s = _mm256_set_pd(
478 not remainderIsMasked or rest > 3 ? _PPLibrary->
getMixing24Epsilon(*typeID1ptr, *(typeID2ptr + 3)) : 0,
479 not remainderIsMasked or rest > 2 ? _PPLibrary->getMixing24Epsilon(*typeID1ptr, *(typeID2ptr + 2)) : 0,
480 not remainderIsMasked or rest > 1 ? _PPLibrary->getMixing24Epsilon(*typeID1ptr, *(typeID2ptr + 1)) : 0,
481 _PPLibrary->getMixing24Epsilon(*typeID1ptr, *(typeID2ptr + 0)));
482 sigmaSquareds = _mm256_set_pd(
483 not remainderIsMasked or rest > 3 ? _PPLibrary->
getMixingSigmaSquared(*typeID1ptr, *(typeID2ptr + 3)) : 0,
484 not remainderIsMasked or rest > 2 ? _PPLibrary->getMixingSigmaSquared(*typeID1ptr, *(typeID2ptr + 2)) : 0,
485 not remainderIsMasked or rest > 1 ? _PPLibrary->getMixingSigmaSquared(*typeID1ptr, *(typeID2ptr + 1)) : 0,
486 _PPLibrary->getMixingSigmaSquared(*typeID1ptr, *(typeID2ptr + 0)));
487 if constexpr (applyShift) {
488 shift6s = _mm256_set_pd(
489 (not remainderIsMasked or rest > 3) ? _PPLibrary->
getMixingShift6(*typeID1ptr, *(typeID2ptr + 3)) : 0,
490 (not remainderIsMasked or rest > 2) ? _PPLibrary->getMixingShift6(*typeID1ptr, *(typeID2ptr + 2)) : 0,
491 (not remainderIsMasked or rest > 1) ? _PPLibrary->getMixingShift6(*typeID1ptr, *(typeID2ptr + 1)) : 0,
492 _PPLibrary->getMixingShift6(*typeID1ptr, *(typeID2ptr + 0)));
496 const __m256d x2 = remainderIsMasked ? _mm256_maskload_pd(&x2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&x2ptr[j]);
497 const __m256d y2 = remainderIsMasked ? _mm256_maskload_pd(&y2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&y2ptr[j]);
498 const __m256d z2 = remainderIsMasked ? _mm256_maskload_pd(&z2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&z2ptr[j]);
500 const __m256d drx = _mm256_sub_pd(x1, x2);
501 const __m256d dry = _mm256_sub_pd(y1, y2);
502 const __m256d drz = _mm256_sub_pd(z1, z2);
504 const __m256d drx2 = _mm256_mul_pd(drx, drx);
505 const __m256d dry2 = _mm256_mul_pd(dry, dry);
506 const __m256d drz2 = _mm256_mul_pd(drz, drz);
508 const __m256d dr2PART = _mm256_add_pd(drx2, dry2);
509 const __m256d dr2 = _mm256_add_pd(dr2PART, drz2);
514 const __m256d cutoffMask = _mm256_cmp_pd(dr2, _cutoffSquared, _CMP_LE_OS);
517 const __m256i ownedStateJ = remainderIsMasked
518 ? _mm256_castpd_si256(_mm256_maskload_pd(
519 reinterpret_cast<double const *
>(&ownedStatePtr2[j]), _masks[rest - 1]))
520 : _mm256_loadu_si256(reinterpret_cast<const __m256i *>(&ownedStatePtr2[j]));
522 const __m256d dummyMask = _mm256_cmp_pd(_mm256_castsi256_pd(ownedStateJ), _zero, _CMP_NEQ_UQ);
523 const __m256d cutoffDummyMask = _mm256_and_pd(cutoffMask, dummyMask);
526 if (_mm256_movemask_pd(cutoffDummyMask) == 0) {
530 const __m256d invdr2 = _mm256_div_pd(_one, dr2);
531 const __m256d lj2 = _mm256_mul_pd(sigmaSquareds, invdr2);
532 const __m256d lj4 = _mm256_mul_pd(lj2, lj2);
533 const __m256d lj6 = _mm256_mul_pd(lj2, lj4);
534 const __m256d lj12 = _mm256_mul_pd(lj6, lj6);
535 const __m256d lj12m6 = _mm256_sub_pd(lj12, lj6);
536 const __m256d lj12m6alj12 = _mm256_add_pd(lj12m6, lj12);
537 const __m256d lj12m6alj12e = _mm256_mul_pd(lj12m6alj12, epsilon24s);
538 const __m256d fac = _mm256_mul_pd(lj12m6alj12e, invdr2);
540 const __m256d facMasked =
541 remainderIsMasked ? _mm256_and_pd(fac, _mm256_and_pd(cutoffDummyMask, _mm256_castsi256_pd(_masks[rest - 1])))
542 : _mm256_and_pd(fac, cutoffDummyMask);
544 const __m256d fx = _mm256_mul_pd(drx, facMasked);
545 const __m256d fy = _mm256_mul_pd(dry, facMasked);
546 const __m256d fz = _mm256_mul_pd(drz, facMasked);
548 fxacc = _mm256_add_pd(fxacc, fx);
549 fyacc = _mm256_add_pd(fyacc, fy);
550 fzacc = _mm256_add_pd(fzacc, fz);
553 if constexpr (newton3) {
555 remainderIsMasked ? _mm256_maskload_pd(&fx2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&fx2ptr[j]);
557 remainderIsMasked ? _mm256_maskload_pd(&fy2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&fy2ptr[j]);
559 remainderIsMasked ? _mm256_maskload_pd(&fz2ptr[j], _masks[rest - 1]) : _mm256_loadu_pd(&fz2ptr[j]);
561 const __m256d fx2new = _mm256_sub_pd(fx2, fx);
562 const __m256d fy2new = _mm256_sub_pd(fy2, fy);
563 const __m256d fz2new = _mm256_sub_pd(fz2, fz);
565 remainderIsMasked ? _mm256_maskstore_pd(&fx2ptr[j], _masks[rest - 1], fx2new)
566 : _mm256_storeu_pd(&fx2ptr[j], fx2new);
567 remainderIsMasked ? _mm256_maskstore_pd(&fy2ptr[j], _masks[rest - 1], fy2new)
568 : _mm256_storeu_pd(&fy2ptr[j], fy2new);
569 remainderIsMasked ? _mm256_maskstore_pd(&fz2ptr[j], _masks[rest - 1], fz2new)
570 : _mm256_storeu_pd(&fz2ptr[j], fz2new);
573 if constexpr (calculateGlobals) {
575 const __m256d virialX = _mm256_mul_pd(fx, drx);
576 const __m256d virialY = _mm256_mul_pd(fy, dry);
577 const __m256d virialZ = _mm256_mul_pd(fz, drz);
580 const __m256d potentialEnergy = wrapperFMA(epsilon24s, lj12m6, shift6s);
582 const __m256d potentialEnergyMasked =
584 ? _mm256_and_pd(potentialEnergy, _mm256_and_pd(cutoffDummyMask, _mm256_castsi256_pd(_masks[rest - 1])))
585 : _mm256_and_pd(potentialEnergy, cutoffDummyMask);
588 _mm256_cmp_pd(_mm256_castsi256_pd(ownedStateI), _mm256_castsi256_pd(_ownedStateOwnedMM256i), _CMP_EQ_UQ);
589 __m256d energyFactor = _mm256_blendv_pd(_zero, _one, ownedMaskI);
590 if constexpr (newton3) {
592 _mm256_cmp_pd(_mm256_castsi256_pd(ownedStateJ), _mm256_castsi256_pd(_ownedStateOwnedMM256i), _CMP_EQ_UQ);
593 energyFactor = _mm256_add_pd(energyFactor, _mm256_blendv_pd(_zero, _one, ownedMaskJ));
595 *potentialEnergySum = wrapperFMA(energyFactor, potentialEnergyMasked, *potentialEnergySum);
596 *virialSumX = wrapperFMA(energyFactor, virialX, *virialSumX);
597 *virialSumY = wrapperFMA(energyFactor, virialY, *virialSumY);
598 *virialSumZ = wrapperFMA(energyFactor, virialZ, *virialSumZ);
613 bool newton3)
final {
614 if (soa.
size() == 0 or neighborList.empty())
return;
616 SoAFunctorVerletImpl<true>(soa, indexFirst, neighborList);
618 SoAFunctorVerletImpl<false>(soa, indexFirst, neighborList);
623 template <
bool newton3>
627 const auto *
const __restrict ownedStatePtr = soa.template begin<Particle_T::AttributeNames::ownershipState>();
632 const auto *
const __restrict xptr = soa.template begin<Particle_T::AttributeNames::posX>();
633 const auto *
const __restrict yptr = soa.template begin<Particle_T::AttributeNames::posY>();
634 const auto *
const __restrict zptr = soa.template begin<Particle_T::AttributeNames::posZ>();
636 auto *
const __restrict fxptr = soa.template begin<Particle_T::AttributeNames::forceX>();
637 auto *
const __restrict fyptr = soa.template begin<Particle_T::AttributeNames::forceY>();
638 auto *
const __restrict fzptr = soa.template begin<Particle_T::AttributeNames::forceZ>();
640 const auto *
const __restrict typeIDptr = soa.template begin<Particle_T::AttributeNames::typeId>();
643 __m256d virialSumX = _mm256_setzero_pd();
644 __m256d virialSumY = _mm256_setzero_pd();
645 __m256d virialSumZ = _mm256_setzero_pd();
646 __m256d potentialEnergySum = _mm256_setzero_pd();
647 __m256d fxacc = _mm256_setzero_pd();
648 __m256d fyacc = _mm256_setzero_pd();
649 __m256d fzacc = _mm256_setzero_pd();
652 const auto x1 = _mm256_broadcast_sd(&xptr[indexFirst]);
653 const auto y1 = _mm256_broadcast_sd(&yptr[indexFirst]);
654 const auto z1 = _mm256_broadcast_sd(&zptr[indexFirst]);
657 __m256i ownedStateI = _mm256_set1_epi64x(
static_cast<int64_t
>(ownedStatePtr[indexFirst]));
659 alignas(64) std::array<double, vecLength> x2tmp{};
660 alignas(64) std::array<double, vecLength> y2tmp{};
661 alignas(64) std::array<double, vecLength> z2tmp{};
662 alignas(64) std::array<double, vecLength> fx2tmp{};
663 alignas(64) std::array<double, vecLength> fy2tmp{};
664 alignas(64) std::array<double, vecLength> fz2tmp{};
665 alignas(64) std::array<size_t, vecLength> typeID2tmp{};
666 alignas(64) std::array<autopas::OwnershipState, vecLength> ownedStates2tmp{};
675 for (; j < (neighborList.size() & ~(vecLength - 1)); j += vecLength) {
687 for (
size_t vecIndex = 0; vecIndex < vecLength; ++vecIndex) {
688 x2tmp[vecIndex] = xptr[neighborList[j + vecIndex]];
689 y2tmp[vecIndex] = yptr[neighborList[j + vecIndex]];
690 z2tmp[vecIndex] = zptr[neighborList[j + vecIndex]];
691 if constexpr (newton3) {
692 fx2tmp[vecIndex] = fxptr[neighborList[j + vecIndex]];
693 fy2tmp[vecIndex] = fyptr[neighborList[j + vecIndex]];
694 fz2tmp[vecIndex] = fzptr[neighborList[j + vecIndex]];
696 typeID2tmp[vecIndex] = typeIDptr[neighborList[j + vecIndex]];
697 ownedStates2tmp[vecIndex] = ownedStatePtr[neighborList[j + vecIndex]];
700 SoAKernel<newton3, false>(0, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStates2tmp.data()), x1, y1, z1,
701 x2tmp.data(), y2tmp.data(), z2tmp.data(), fx2tmp.data(), fy2tmp.data(), fz2tmp.data(),
702 &typeIDptr[indexFirst], typeID2tmp.data(), fxacc, fyacc, fzacc, &virialSumX,
703 &virialSumY, &virialSumZ, &potentialEnergySum, 0);
705 if constexpr (newton3) {
706 for (
size_t vecIndex = 0; vecIndex < vecLength; ++vecIndex) {
707 fxptr[neighborList[j + vecIndex]] = fx2tmp[vecIndex];
708 fyptr[neighborList[j + vecIndex]] = fy2tmp[vecIndex];
709 fzptr[neighborList[j + vecIndex]] = fz2tmp[vecIndex];
716 const auto rest =
static_cast<int>(neighborList.size() & (vecLength - 1));
730 for (
size_t vecIndex = 0; vecIndex < rest; ++vecIndex) {
731 x2tmp[vecIndex] = xptr[neighborList[j + vecIndex]];
732 y2tmp[vecIndex] = yptr[neighborList[j + vecIndex]];
733 z2tmp[vecIndex] = zptr[neighborList[j + vecIndex]];
735 if constexpr (newton3) {
736 fx2tmp[vecIndex] = fxptr[neighborList[j + vecIndex]];
737 fy2tmp[vecIndex] = fyptr[neighborList[j + vecIndex]];
738 fz2tmp[vecIndex] = fzptr[neighborList[j + vecIndex]];
740 typeID2tmp[vecIndex] = typeIDptr[neighborList[j + vecIndex]];
741 ownedStates2tmp[vecIndex] = ownedStatePtr[neighborList[j + vecIndex]];
744 SoAKernel<newton3, true>(0, ownedStateI,
reinterpret_cast<const int64_t *
>(ownedStates2tmp.data()), x1, y1, z1,
745 x2tmp.data(), y2tmp.data(), z2tmp.data(), fx2tmp.data(), fy2tmp.data(), fz2tmp.data(),
746 &typeIDptr[indexFirst], typeID2tmp.data(), fxacc, fyacc, fzacc, &virialSumX, &virialSumY,
747 &virialSumZ, &potentialEnergySum, rest);
749 if constexpr (newton3) {
750 for (
size_t vecIndex = 0; vecIndex < rest; ++vecIndex) {
751 fxptr[neighborList[j + vecIndex]] = fx2tmp[vecIndex];
752 fyptr[neighborList[j + vecIndex]] = fy2tmp[vecIndex];
753 fzptr[neighborList[j + vecIndex]] = fz2tmp[vecIndex];
759 const __m256d hSumfxfy = _mm256_hadd_pd(fxacc, fyacc);
760 const __m256d hSumfz = _mm256_hadd_pd(fzacc, fzacc);
762 const __m128d hSumfxfyLow = _mm256_extractf128_pd(hSumfxfy, 0);
763 const __m128d hSumfzLow = _mm256_extractf128_pd(hSumfz, 0);
765 const __m128d hSumfxfyHigh = _mm256_extractf128_pd(hSumfxfy, 1);
766 const __m128d hSumfzHigh = _mm256_extractf128_pd(hSumfz, 1);
768 const __m128d sumfxfyVEC = _mm_add_pd(hSumfxfyLow, hSumfxfyHigh);
769 const __m128d sumfzVEC = _mm_add_pd(hSumfzLow, hSumfzHigh);
771 const double sumfx = sumfxfyVEC[0];
772 const double sumfy = sumfxfyVEC[1];
773 const double sumfz = _mm_cvtsd_f64(sumfzVEC);
775 fxptr[indexFirst] += sumfx;
776 fyptr[indexFirst] += sumfy;
777 fzptr[indexFirst] += sumfz;
779 if constexpr (calculateGlobals) {
783 const __m256d hSumVirialxy = _mm256_hadd_pd(virialSumX, virialSumY);
784 const __m128d hSumVirialxyLow = _mm256_extractf128_pd(hSumVirialxy, 0);
785 const __m128d hSumVirialxyHigh = _mm256_extractf128_pd(hSumVirialxy, 1);
786 const __m128d hSumVirialxyVec = _mm_add_pd(hSumVirialxyHigh, hSumVirialxyLow);
789 const __m256d hSumVirialzPotentialEnergy = _mm256_hadd_pd(virialSumZ, potentialEnergySum);
790 const __m128d hSumVirialzPotentialEnergyLow = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 0);
791 const __m128d hSumVirialzPotentialEnergyHigh = _mm256_extractf128_pd(hSumVirialzPotentialEnergy, 1);
792 const __m128d hSumVirialzPotentialEnergyVec =
793 _mm_add_pd(hSumVirialzPotentialEnergyHigh, hSumVirialzPotentialEnergyLow);
797 _mm_store_pd(&globals[0], hSumVirialxyVec);
798 _mm_store_pd(&globals[2], hSumVirialzPotentialEnergyVec);
800 _aosThreadData[threadnum].virialSum[0] += globals[0];
801 _aosThreadData[threadnum].virialSum[1] += globals[1];
802 _aosThreadData[threadnum].virialSum[2] += globals[2];
803 _aosThreadData[threadnum].potentialEnergySum += globals[3];
814 return std::array<typename Particle_T::AttributeNames, 9>{Particle_T::AttributeNames::id,
815 Particle_T::AttributeNames::posX,
816 Particle_T::AttributeNames::posY,
817 Particle_T::AttributeNames::posZ,
818 Particle_T::AttributeNames::forceX,
819 Particle_T::AttributeNames::forceY,
820 Particle_T::AttributeNames::forceZ,
821 Particle_T::AttributeNames::typeId,
822 Particle_T::AttributeNames::ownershipState};
829 return std::array<typename Particle_T::AttributeNames, 6>{
830 Particle_T::AttributeNames::id, Particle_T::AttributeNames::posX,
831 Particle_T::AttributeNames::posY, Particle_T::AttributeNames::posZ,
832 Particle_T::AttributeNames::typeId, Particle_T::AttributeNames::ownershipState};
839 return std::array<typename Particle_T::AttributeNames, 3>{
840 Particle_T::AttributeNames::forceX, Particle_T::AttributeNames::forceY, Particle_T::AttributeNames::forceZ};
854 _potentialEnergySum = 0.;
855 _virialSum = {0., 0., 0.};
856 _postProcessed =
false;
857 for (
size_t i = 0; i < _aosThreadData.size(); ++i) {
858 _aosThreadData[i].setZero();
867 using namespace autopas::utils::ArrayMath::literals;
869 if (_postProcessed) {
871 "Already postprocessed, endTraversal(bool newton3) was called twice without calling initTraversal().");
873 if (calculateGlobals) {
874 for (
size_t i = 0; i < _aosThreadData.size(); ++i) {
875 _potentialEnergySum += _aosThreadData[i].potentialEnergySum;
876 _virialSum += _aosThreadData[i].virialSum;
880 _potentialEnergySum *= 0.5;
884 _potentialEnergySum /= 6.;
885 _postProcessed =
true;
887 AutoPasLog(DEBUG,
"Final potential energy {}", _potentialEnergySum);
888 AutoPasLog(DEBUG,
"Final virial {}", _virialSum[0] + _virialSum[1] + _virialSum[2]);
897 if (not calculateGlobals) {
899 "Trying to get potential energy even though calculateGlobals is false. If you want this functor to calculate "
901 "values, please specify calculateGlobals to be true.");
903 if (not _postProcessed) {
905 "Cannot get potential energy, because endTraversal was not called.");
907 return _potentialEnergySum;
915 if (not calculateGlobals) {
917 "Trying to get virial even though calculateGlobals is false. If you want this functor to calculate global "
918 "values, please specify calculateGlobals to be true.");
920 if (not _postProcessed) {
922 "Cannot get virial, because endTraversal was not called.");
924 return _virialSum[0] + _virialSum[1] + _virialSum[2];
937 _epsilon24 = _mm256_set1_pd(epsilon24);
938 _sigmaSquared = _mm256_set1_pd(sigmaSquared);
939 if constexpr (applyShift) {
940 _shift6 = _mm256_set1_pd(
943 _shift6 = _mm256_setzero_pd();
947 _epsilon24AoS = epsilon24;
948 _sigmaSquaredAoS = sigmaSquared;
949 if constexpr (applyShift) {
965 inline __m256d wrapperFMA(
const __m256d &factorA,
const __m256d &factorB,
const __m256d &summandC) {
967 return _mm256_fmadd_pd(factorA, factorB, summandC);
969 const __m256d tmp = _mm256_mul_pd(factorA, factorB);
970 return _mm256_add_pd(summandC, tmp);
981 class AoSThreadData {
983 AoSThreadData() : virialSum{0., 0., 0.}, potentialEnergySum{0.}, __remainingTo64{} {}
985 virialSum = {0., 0., 0.};
986 potentialEnergySum = 0.;
990 std::array<double, 3> virialSum;
991 double potentialEnergySum;
995 double __remainingTo64[(64 - 4 *
sizeof(double)) /
sizeof(double)];
998 static_assert(
sizeof(AoSThreadData) % 64 == 0,
"AoSThreadData has wrong size");
1001 const __m256d _zero{_mm256_set1_pd(0.)};
1002 const __m256d _one{_mm256_set1_pd(1.)};
1003 const __m256i _vindex = _mm256_set_epi64x(0, 1, 3, 4);
1004 const __m256i _masks[3]{
1005 _mm256_set_epi64x(0, 0, 0, -1),
1006 _mm256_set_epi64x(0, 0, -1, -1),
1007 _mm256_set_epi64x(0, -1, -1, -1),
1009 const __m256i _ownedStateDummyMM256i{0x0};
1011 const __m256d _cutoffSquared{};
1012 __m256d _shift6 = _mm256_setzero_pd();
1013 __m256d _epsilon24{};
1014 __m256d _sigmaSquared{};
1017 const double _cutoffSquaredAoS = 0;
1018 double _epsilon24AoS, _sigmaSquaredAoS, _shift6AoS = 0;
1023 double _potentialEnergySum;
1026 std::array<double, 3> _virialSum;
1029 std::vector<AoSThreadData> _aosThreadData;
1032 bool _postProcessed;
1036 constexpr static size_t vecLength = 4;
#define AutoPasLog(lvl, fmt,...)
Macro for logging providing common meta information without filename.
Definition: Logger.h:24
This class stores the (physical) properties of molecule types, and, in the case of multi-site molecul...
Definition: ParticlePropertiesLibrary.h:28
floatType getMixingShift6(intType i, intType j) const
Returns precomputed mixed shift * 6 for one pair of site types.
Definition: ParticlePropertiesLibrary.h:262
floatType getMixingSigmaSquared(intType i, intType j) const
Returns precomputed mixed squared sigma for one pair of site types.
Definition: ParticlePropertiesLibrary.h:252
floatType getMixing24Epsilon(intType i, intType j) const
Returns the precomputed mixed epsilon * 24.
Definition: ParticlePropertiesLibrary.h:224
static double calcShift6(double epsilon24, double sigmaSquared, double cutoffSquared)
Calculate the shift multiplied 6 of the lennard jones potential from given cutoff,...
Definition: ParticlePropertiesLibrary.h:576
AlignedAllocator class.
Definition: AlignedAllocator.h:29
Functor base class.
Definition: Functor.h:41
PairwiseFunctor class.
Definition: PairwiseFunctor.h:31
View on a fixed part of a SoA between a start index and an end index.
Definition: SoAView.h:23
size_t size() const
Returns the number of particles in the view.
Definition: SoAView.h:83
Default exception class for autopas exceptions.
Definition: ExceptionHandler.h:116
static void exception(const Exception e)
Handle an exception derived by std::exception.
Definition: ExceptionHandler.h:64
A functor to handle lennard-jones interactions between two particles (molecules).
Definition: LJFunctorAVX.h:50
bool allowsNewton3() final
Specifies whether the functor is capable of Newton3-like functors.
Definition: LJFunctorAVX.h:121
void initTraversal() final
Reset the global values.
Definition: LJFunctorAVX.h:853
LJFunctorAVX(double cutoff, ParticlePropertiesLibrary< double, size_t > &particlePropertiesLibrary)
Constructor for Functor with mixing active.
Definition: LJFunctorAVX.h:109
std::string getName() final
Returns name of functor.
Definition: LJFunctorAVX.h:117
double getVirial()
Get the virial.
Definition: LJFunctorAVX.h:914
double getPotentialEnergy()
Get the potential Energy.
Definition: LJFunctorAVX.h:896
static constexpr auto getComputedAttr()
Get attributes computed by this functor.
Definition: LJFunctorAVX.h:838
LJFunctorAVX(double cutoff)
Constructor for Functor with mixing disabled.
Definition: LJFunctorAVX.h:97
static constexpr bool getMixing()
Definition: LJFunctorAVX.h:847
void SoAFunctorSingle(autopas::SoAView< SoAArraysType > soa, bool newton3) final
PairwiseFunctor for structure of arrays (SoA)
Definition: LJFunctorAVX.h:187
void SoAFunctorVerlet(autopas::SoAView< SoAArraysType > soa, const size_t indexFirst, const std::vector< size_t, autopas::AlignedAllocator< size_t > > &neighborList, bool newton3) final
PairwiseFunctor for structure of arrays (SoA) for neighbor lists.
Definition: LJFunctorAVX.h:611
void AoSFunctor(Particle_T &i, Particle_T &j, bool newton3) final
PairwiseFunctor for arrays of structures (AoS).
Definition: LJFunctorAVX.h:129
void SoAFunctorPair(autopas::SoAView< SoAArraysType > soa1, autopas::SoAView< SoAArraysType > soa2, const bool newton3) final
PairwiseFunctor for structure of arrays (SoA)
Definition: LJFunctorAVX.h:194
bool allowsNonNewton3() final
Specifies whether the functor is capable of non-Newton3-like functors.
Definition: LJFunctorAVX.h:125
static constexpr auto getNeededAttr()
Get attributes needed for computation.
Definition: LJFunctorAVX.h:813
static constexpr auto getNeededAttr(std::false_type)
Get attributes needed for computation without N3 optimization.
Definition: LJFunctorAVX.h:828
bool isRelevantForTuning() final
Specifies whether the functor should be considered for the auto-tuning process.
Definition: LJFunctorAVX.h:119
void setParticleProperties(double epsilon24, double sigmaSquared)
Sets the particle properties constants for this functor.
Definition: LJFunctorAVX.h:935
LJFunctorAVX()=delete
Deleted default constructor.
void endTraversal(bool newton3) final
Accumulates global values, e.g.
Definition: LJFunctorAVX.h:866
constexpr T dot(const std::array< T, SIZE > &a, const std::array< T, SIZE > &b)
Generates the dot product of two arrays.
Definition: ArrayMath.h:233
int autopas_get_max_threads()
Dummy for omp_get_max_threads() when no OpenMP is available.
Definition: WrapOpenMP.h:144
@ dummy
Dummy or deleted state, a particle with this state is not an actual particle!
@ owned
Owned state, a particle with this state is an actual particle and owned by the current AutoPas object...
FunctorN3Modes
Newton 3 modes for the Functor.
Definition: Functor.h:23
int autopas_get_thread_num()
Dummy for omp_set_lock() when no OpenMP is available.
Definition: WrapOpenMP.h:132